Which port are you experiencing issues with, and how long have you had your CR-V? Mine just turned one and I use the center USB port in the center console (not the CarPlay/AA one) religiously, and I haven't had any issues with it so far (*knock on wood*). Though I never do unplug it, as I have a cord just for the car, so maybe it's the constant unplugging and re-plugging of your cord into the USB?
If your car is still under warranty and you think it's an issue with the port, I'd say take it in. I'm no warranty expert, but I feel like this is something that they'd cover.
If your car is still under warranty and you think it's an issue with the port, I'd say take it in. I'm no warranty expert, but I feel like this is something that they'd cover.